Fix goals audit to preserve prose and support partial goals

GoalsSaver changes:
- Now preserves prose content (Vision, Principles, etc.) before goal sections
- Only rewrites ## Active, ## Future, ## Non-Goals sections
- Extracts and reinserts prose content between frontmatter and goals

Audit handler changes:
- Supports new status field: "met", "partial", "not_met"
- Maintains backward compatibility with old "checked" boolean format
- Sets Goal.partial=True for partially achieved goals
- Report shows partial count in summary

This fixes a bug where the audit button would delete all prose content
from goals.md files that had philosophy/context sections.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

src/development_hub/parsers/goals_parser.py

@@ -428,7 +428,12 @@ class MilestonesParser(BaseParser):
 
 
 class GoalsSaver:
-    """Save goals back to goals.md file."""
+    """Save goals back to goals.md file.
+
+    This saver preserves prose content (Vision, Principles, etc.) that appears
+    before the goal sections. Only the ## Active, ## Future, and ## Non-Goals
+    sections are rewritten with updated checkbox states.
+    """
 
     def __init__(self, path: Path, frontmatter: dict):
         """Initialize saver.
@@ -441,11 +446,19 @@ class GoalsSaver:
         self.frontmatter = frontmatter
 
     def save(self, goal_list: GoalList):
-        """Save goals back to file.
+        """Save goals back to file, preserving prose content.
 
         Args:
             goal_list: GoalList to save
         """
+        # Read existing file to preserve prose content
+        existing_content = ""
+        if self.path.exists():
+            existing_content = self.path.read_text()
+
+        # Extract prose content (everything before first goal section)
+        prose_content = self._extract_prose_content(existing_content)
+
         lines = []
 
         # Write frontmatter
@@ -454,7 +467,12 @@ class GoalsSaver:
             lines.append(f"{key}: {value}")
         lines.append("---")
         lines.append("")
-        lines.append("# Goals")
+
+        # Add preserved prose content (without frontmatter, it's already added)
+        if prose_content:
+            lines.append(prose_content)
+            # Ensure there's a blank line before goal sections
+            if not prose_content.endswith("\n\n"):
                 lines.append("")
 
         # Active goals
@@ -488,6 +506,53 @@ class GoalsSaver:
 
         atomic_write(self.path, "\n".join(lines))
 
+    def _extract_prose_content(self, content: str) -> str:
+        """Extract prose content before goal sections.
+
+        Preserves everything between the frontmatter and the first goal section
+        (## Active, ## Future, or ## Non-Goals).
+
+        Args:
+            content: Full file content
+
+        Returns:
+            Prose content without frontmatter, or empty string
+        """
+        if not content:
+            return ""
+
+        # Remove frontmatter
+        lines = content.split("\n")
+        start_idx = 0
+
+        # Skip frontmatter (between --- markers)
+        if lines and lines[0].strip() == "---":
+            for i, line in enumerate(lines[1:], 1):
+                if line.strip() == "---":
+                    start_idx = i + 1
+                    break
+
+        # Find where goal sections start
+        goal_section_headers = ["## active", "## future", "## non-goal", "## non goal"]
+        end_idx = len(lines)
+
+        for i, line in enumerate(lines[start_idx:], start_idx):
+            line_lower = line.strip().lower()
+            if any(line_lower.startswith(header) for header in goal_section_headers):
+                end_idx = i
+                break
+
+        # Extract prose content
+        prose_lines = lines[start_idx:end_idx]
+
+        # Strip leading/trailing empty lines but preserve internal structure
+        while prose_lines and not prose_lines[0].strip():
+            prose_lines.pop(0)
+        while prose_lines and not prose_lines[-1].strip():
+            prose_lines.pop()
+
+        return "\n".join(prose_lines)
+
     @staticmethod
     def _get_checkbox(goal: Goal) -> str:
         """Get the checkbox marker for a goal's state.

src/development_hub/views/dashboard.py

@@ -2512,29 +2512,53 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
             updated=frontmatter.get("updated"),
         )
 
+        def parse_status(item: dict) -> tuple[bool, bool]:
+            """Parse status field to (completed, partial) tuple.
+
+            Supports both old format (checked: bool) and new format (status: str).
+            """
+            # New format: status field
+            status = item.get("status", "").lower()
+            if status == "met":
+                return True, False
+            elif status == "partial":
+                return False, True
+            elif status == "not_met":
+                return False, False
+
+            # Old format fallback: checked field
+            checked = item.get("checked", False)
+            return checked, False
+
         # Process active goals
         for item in audit_data.get("active", []):
+            completed, partial = parse_status(item)
             goal = Goal(
                 text=item.get("text", ""),
-                completed=item.get("checked", False),
+                completed=completed,
+                partial=partial,
                 priority=item.get("priority", "medium"),
             )
             goal_list.active.append(goal)
 
         # Process future goals
         for item in audit_data.get("future", []):
+            completed, partial = parse_status(item)
             goal = Goal(
                 text=item.get("text", ""),
-                completed=item.get("checked", False),
+                completed=completed,
+                partial=partial,
                 priority=item.get("priority", "medium"),
             )
             goal_list.future.append(goal)
 
         # Process non-goals
         for item in audit_data.get("non_goals", []):
+            completed, partial = parse_status(item)
             goal = Goal(
                 text=item.get("text", ""),
-                completed=item.get("checked", False),
+                completed=completed,
+                partial=partial,
                 priority=item.get("priority", "medium"),
             )
             goal_list.non_goals.append(goal)
@@ -2545,6 +2569,19 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
 
     def _build_audit_report(self, audit_data: dict) -> str:
         """Build a human-readable report from audit data."""
+
+        def get_status_marker(item: dict) -> str:
+            """Get checkbox marker from status or checked field."""
+            status = item.get("status", "").lower()
+            if status == "met":
+                return "[x]"
+            elif status == "partial":
+                return "[~]"
+            elif status == "not_met":
+                return "[ ]"
+            # Fallback to old format
+            return "[x]" if item.get("checked") else "[ ]"
+
         lines = []
         lines.append("=" * 60)
         lines.append("GOALS AUDIT REPORT")
@@ -2555,7 +2592,7 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
         lines.append("ACTIVE GOALS")
         lines.append("-" * 40)
         for item in audit_data.get("active", []):
-            status = "[x]" if item.get("checked") else "[ ]"
+            status = get_status_marker(item)
             lines.append(f"{status} {item.get('text', '')}")
             lines.append(f"    -> {item.get('reason', 'No reason provided')}")
             lines.append("")
@@ -2564,7 +2601,7 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
         lines.append("FUTURE GOALS")
         lines.append("-" * 40)
         for item in audit_data.get("future", []):
-            status = "[x]" if item.get("checked") else "[ ]"
+            status = get_status_marker(item)
             lines.append(f"{status} {item.get('text', '')}")
             lines.append(f"    -> {item.get('reason', 'No reason provided')}")
             lines.append("")
@@ -2573,7 +2610,7 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
         lines.append("NON-GOALS")
         lines.append("-" * 40)
         for item in audit_data.get("non_goals", []):
-            status = "[x]" if item.get("checked") else "[ ]"
+            status = get_status_marker(item)
             lines.append(f"{status} {item.get('text', '')}")
             lines.append(f"    -> {item.get('reason', 'No reason provided')}")
             lines.append("")
@@ -2583,7 +2620,13 @@ generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
         lines.append("=" * 60)
         lines.append("SUMMARY")
         lines.append("=" * 60)
-        lines.append(f"Active Goals:  {summary.get('active_met', 0)}/{summary.get('active_total', 0)} met")
+        active_met = summary.get('active_met', 0)
+        active_partial = summary.get('active_partial', 0)
+        active_total = summary.get('active_total', 0)
+        if active_partial > 0:
+            lines.append(f"Active Goals:  {active_met} met, {active_partial} partial / {active_total} total")
+        else:
+            lines.append(f"Active Goals:  {active_met}/{active_total} met")
         lines.append(f"Future Goals:  {summary.get('future_started', 0)}/{summary.get('future_total', 0)} started")
         lines.append(f"Non-Goals:     {summary.get('non_goals_confirmed', 0)}/{summary.get('non_goals_total', 0)} confirmed")
         lines.append("")